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ROBOT is licensed under the
BSD 3-Clause License.
Theme by orderedlist

Missing Definition

Problem: An entity does not have a definition or elucidation. This may cause confusion or misuse of the entity. Excludes deprecated entities.

OBO Foundry Principle: 6 - Textual Definitions

Solution: Add a definition.

PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>

SELECT DISTINCT ?entity ?property ?value WHERE {
  VALUES ?property { obo:IAO_0000115 }
  ?entity ?any ?o
  FILTER NOT EXISTS { ?entity ?property ?value }
  FILTER NOT EXISTS { ?entity obo:IAO_0000600 ?elucidation }
  FILTER NOT EXISTS { ?entity a owl:Ontology }
  FILTER NOT EXISTS { ?entity a owl:NamedIndividual }
  FILTER NOT EXISTS { ?entity owl:deprecated true }
  FILTER NOT EXISTS {
    ?entity rdfs:subPropertyOf oboInOwl:SubsetProperty .
  }
  FILTER EXISTS {
    ?entity ?prop2 ?object .
    FILTER (?prop2 != rdf:type)
    FILTER (?prop2 != owl:equivalentClass)
    FILTER (?prop2 != owl:disjointWith)
    FILTER (?prop2 != owl:equivalentProperty)
    FILTER (?prop2 != owl:sameAs)
    FILTER (?prop2 != owl:differentFrom)
    FILTER (?prop2 != owl:inverseOf)
  }
  FILTER (!isBlank(?entity)) }
ORDER BY ?entity